SUMMARY OF FACULTY ACTIVITIES REPORT
FOR JULY 1, 2005 TO JUNE 30, 2006
Physics Department
I.
Publications, Performances,
Exhibits
III.
Editorships, Offices, and
Consultancies
V.
Awards
I.
Publications, Performances, Exhibits
Anderson, Paul R.
(with Ardeshir Eftekharzadeh and Bei-Lok Hu) “Self-force on a Scalar Charge in Radial Infall from Res Using the Hadamard-WKB Expansion.” Phys. Rev. D 73 (2006): 064023.
(with Carmen Molina-Paris and Emil
Mottola) “Short Distance and
Bonin,
Keith D.
(with Andrew W. Shelton, D. Bonessi,
and Thad G. Walker) “Nonlinear Motion of Rotating Glass Fibers.” in Optical
Trapping and Optical Micromanipulation, edited by Kishan
Dholakia, Gabriel C. Spalding, Proceedings of SPIE 5930
(SPIE, Bellingham, WA, 2005): 59302B-1 to 59302B-8.
Carroll, David L.
“Functional Carbon Nanotubes.”
Ed. D.L. Carroll, B.
Weisman, S. Roth, A. Rubio, MRS Symposium Proceedings, Volume 858E, (MRS Press,
Refereed Articles:
(with Scott Webster, Marisol Reyes-Reyes, Xavier Pedron, Román López-Sandoval, and Mauricio Terrones) “Enhanced Nonlinear Transmittance by Cooperative Nonlinear Mechanisms: a reverse saturable absorbing carbocyanine dye blended with nonlinear scattering carbon nanotubes.” Advanced Materials, Volume 17, Issue 10 (May 2005): 1239-1243.
(with Kyungkon
Kim, Scott Webster, Nicole Levi, Mauricio R. Pinto, and Kirk
(with Kyungkon Kim) “Roles of Au and Ag Nanoparticles in Efficiency Enhancement of Poly(3-octylthiophene) / C60 Bulk Heterojunction Photovoltaic Devices.” Applied Physics Letters 87(2005): 203113.
(with Marisol Reyes-Reyes and Kyungkon Kim) “High Efficiency Photovoltaic Devices based on Annealed Poly(3-hexylthiophene) and 1-(3-methoxycarbonyl)-propyl-1-phenyl-(6,6)C61 Blends.” Appl. Phys. Lett. 87 (2005): 083506.
(with S. A. Curran, J. A. Talla, and D. Zhang) “Defect-induced Vibrational Response of Multi-walled Carbon Nanotubes using Resonance Raman Spectroscopy.” Journal of Materials Research 20 (12) (2005): 3368-3373.
(with J. Liu) “Temperature and Flow Rate of NH3 Effects on Nitrogen Content and Doping Environments of Carbon Nanotubes Grown by Injection CVD Method, Temperature, and Flow Rate of NH3 Effects on Nitrogen Content and Doping Environments of Carbon Nanotubes Grown by Injection CVD Method.” J. Phys. Chem. B. 33 (2005): 15769-15774.
(with B. Berzina,
L. Trinkler, R. Rutohvostov,
R. T. Williams, R. T., Czerw, and
(with M. Reyes-Reyes, K. Kim, J. Dewald, R. Lopez-Sandoval, A. Avadhanula, and S. Curran) “Meso-Structure Formation for Enhanced Organic Photovoltaic Cells.” Org. Lett.7 26 (2005): 5749-5752.
(with J. Liu, and R. Czerw) “Large-scale Synthesis of Highly Aligned Nitrogen Doped Carbon Nanotubes by Injection Chemical Vapor Deposition Methods.” Journal of Materials Research 20 (2) (2005): 538-543.
(with H. S. Woo,
(with Kyong Kon Kim and Jiwen Liu) “Thermal Diffusion Processes in Bulk Heterojunction Formation for Poly-3-hexylthiophene / C60 Single Heterojunction Photovoltaics.” in press APL, (will be out before 06/2006).
“Polymer Solar Cells Achieve 5.2% Efficiency.” Laser
Focus World 42 (2) (Feb. 2006): 11-11.
(with R. Czerw, and S. Webster) “Polymer-nanotube Composites for Transparent, Conducting Thin Films.” Synthetic Metals 155 (3) (Dec. 15, 2005): 694-697.
Patents:
Disclosures:
(with S. Akman,
F. Torti,
(with M. Namboothiry and J. Liu.) “Novel Fiber Architectures for Organic Solar Cells.” (2005)
(with S. Curran) “Fiber Photovoltaic Devices and Applications Thereof.” MSU (2005).
(with
N. Levi and F. Coldren) “Inkjet Printing of
Biologically Compatible Nanotube Composites.”
(2005)
(with
L. Webb, T. Smith, and F. Coldren) “Novel Approaches to Nano-transducers
for Pressure Measurements in Vivo.” (2005)
Patents Issued:
US Patent approved “Optical Fiber Amplifier with Fully Integrated Pump Source,” J. Ballato and D. Carroll (2005).
Popular lectures on Nanotechnology:
“Conversations of Hope”
“United
Interview in Local Papers on Nanotechnology:
Triad Business Journal
Charnock, Forrest
(with R. Lopusnik and T. J. Silva) “Pump-probe Faraday Rotation Magnetometer using Two Diode Lasers.” Review of Scientific Instruments 76 (2005): 056105.
Fetrow, Jacquelyn S.
“Active Site Profiling to Identify Protein Functional Sites in Sequences and Structures.” Current Protocols in Bioinformatics. (2006) In press.
(with T. P. Creamer) “Rose is a Rose is a Rose. Especially if you're a George.” A perspectives article in Proteins Struct. Funct. Bioinformatics. (2006) In press.
(with E. E. Allen, A. Pecorella, D. J. John, and
(with D. J. John) “Bioinformatics
and Computing Curriculum: A New Model for Interdisciplinary Courses.” SIGSCE,
(with S. T. Knutson and M. H. Edgell) “Mutations in α-helical Solvent Exposed Sites of Eglin C have Long-range Effects: Evidence from Molecular Dynamics Simulations. Proteins: Struct Funct Bioinform. (9 Dec. 2005) [Epub ahead of print].
(with R. G. Huff, E. Bayram, H. Tan, S. T. Knutson, M. H. Knaggs, A. B. Richon, and P. Santago II) “Chemical and Structural Diversity in Cyclooxygenase Protein Active Sites.” Chemistry and Biodiversity 2 (2005): 1533-1552.
(with E. E. Allen, L. W. Daniel, S. J. Thomas, and D. J. John) “Algebraic Dependency Models of Protein Signal Transduction Networks from Time-series Data.” J. Theor. Biol. 21:238(2) (Jan. 2006): 317-30. Epub 5 July 2005.
Guthold, Martin
(with A. K. Mallakin and V. M. Inoue) “In-situ Quantitative Analysis of Tumor Suppressor Protein (hDmp1) Using a Nanomechanical Cantilever Beam.” Vib. Aco. Bio-mech. Sys / IDETC/CIE, Vol. 1 (2005): 2599-2606.
Holzwarth, Natalie A. W.
(with Yonas Abraham) “A Method for Calculating Electronic Structures near Surfaces of Semi-infinite Crystals.” Phys. Rev. B 73 (2006): 035412.
Kim-Shapiro, Daniel B.
(with Jinming Huang, Manudu Yakubu, and S. Bruce King) “Rat Liver Mediated Metabolism of Hydroxyurea to Nitric Oxide.” Free Rad. Biol. Med. 40 (2006): 1675-1681.
(with Alan N. Schechter and Mark
T. Gladwin) “Unraveling the Reactions of Nitric Oxide, Nitrite and Hemoglobin
in Physiology and Therapeutics.” Arteriosclerosis,
Thrombosis, and Vascular Biol. 26 (2006): 697-705.
(with Kris T. Huang, Ivan Azarov, Swati Basu, and Jinming Huang) “Lack of Allosterically Controlled Intramolecular Transfer of Nitric Oxide from the Heme to Cysteine in the Beta Subunit of Hemoglobin.” Blood 107 (2006): 2602-2604.
(with Mark T. Gladwin, Alan N. Schechter, Rakesh Patel, Neil Hogg, Sruti Shiva, Richard O. Cannon, Malte Kelm, David Wink, Michael Graham Espey, Edward Oldfield, Ryszard M. Pluta, Bruce Freeman, Jack Lancaster, Martin Feelisch, and Jon O. Lundberg) “The Emerging Biology of the Nitrite Anion.” Nature Chemical Biology 1 (2005): 308-314.
(with Ivan Azarov, Kris T. Huang, Swati Basu, Mark T. Gladwin, and Neil Hogg) “Nitric Oxide Scavenging by Red Blood Cells as a Function of Hematocrit and Oxygenation.” J. Biol. Chem 280 (2005): 39024-39032.
(with Kris T. Huang, Agnes Keszler, Neil Patel, Rakesh P. Patel, Mark T. Gladwin, and Neil Hogg) “The Reaction between Nitrite and Deoxyhemoglobin: Reassessment of the Reaction Kinetics and Stochiometry.” J. Biol. Chem. 280 (2005): 31126-31131.
(with Anne Jeffers, Xiuli Xu, Kris Huang, Man Cho, Neil Hogg, and Rakesh P. Patel) “Hemoglobin Mediated Nitrite Activation of Soluble Guanylyl Cyclase.” Comp. Biochem. Physiol. Part A 142 (2005): 130-135.
(with Zhi Huang, Sruti Shiva, Rakesh P. Patel, Lorna A. Ringwood, Cythia E. Irby, Kris T. Huang, Chien Ho, Alan N. Schechter, Neil Hogg, and Mark T. Gladwin) “Enzymatic Nitrite Reductase Activity of Hemoglobin Generates NO under Allosteric Control.” J. Clin. Invest, 115 (2005): 2099-2107.
(with Fouad Azizi, Jerrold E. Kielbasa, Adedoyin M. Adeyiga, Rachel D. Maree, Matthew Frazier, Mamudu Yakubu, Howard Shields, and S. Bruce King) “Rates of Nitric Oxide Dissociation from Hemoglobin.” Free Rad. Biol. Med. 39 (2005): 145-151.
Macosko, Jed
(with T. P. Ortiz, J. A. Marshall, L. A. Meyer, R. W. Davis, J. Hatch, D. J. Keller, and J. A. Brozik) “Stepping Statistics of Single HIV-1 Reverse Transcriptase Molecules during DNA Polymerization.” Journal of Physical Chemistry B 109 (2005): 16127 – 16131.
Salsbury, Freddie R.
“Analysis of Errors in Stil's
Equation for Macromolecular Solvation.” Molecular Physics 104
(20) (April 2006): 1299-1309.
Williams, Richard T.
(with Gang Xiong, John Wilkinson, and K. B. Ucer) “Time-of-flight Study of Bound Exciton Polariton Dispersive Propagation in ZnO.” J. Phys.: Condens. Matter 17 (2005): 7287-7296.
(with K. S. Song) “Dynamics Induced by Electronic Transitions: Finite-temperature relaxation of self-trapped excitons to defects in NaCl.” Surface Science 593 (2005): 89-101.
Bonin, Keith D.
Paper: (with
Invited talk: “Molecular Motors and Efficient Motion in a Viscoelastic Environment.” 72nd Meeting of the Southeastern Section of
the APS,
Paper: (with Bonessi, D.
and Walker, T. G.) “Optical
Trapping and Torquing of Nanorods.” 72nd Meeting of the Southeastern Section of
the APS,
Paper: (with Peng, Lu, Cubiciotti,
Roger, and Guthold, Martin) “Novel Single-molecule Methodology to Identify
New Aptamers.”
50th Biophysical Society Annual Meeting,
Paper: (with Bonessi, D.
and Walker, T. G.) “Nonlinear
Motion of Optically Torqued Nanorods.” BULL. AM. PHYS. SOC. {\bf 51}, 584(2006). 107th Annual Meeting of the American Physical
Society,
Carroll, David L.
Invited presentations:
“Colloidal
“Advances in Organic Devices.” Workshop on IR Technologies,
“Advances in Organic Device Technologies.” Int. Conf. on Quantum Transport and Quantum
Functional Materials,
“Applications of Iron Filled Nanotubes.”
American Chemical Society,
“High Efficiency Solar Cells.”
“High Efficiency Organic Solar Cells.” Optical Society of
“High efficiency Solar Cells in Plastic.” ICSM,
“Negative Index Materials.” International Conference on Scintillator Materials,
The group presented 7 talks and posters at SF. MRS, 2 at the
Microscopy Society Meeting, 2 at
Cook, Gregory B.
Invited talk: “Getting
the Spin Right in Black-Hole Binaries.” Presented at the Post-YKIS2005
Scientific Program on Gravitation and Cosmology at the Yukawa Institute for
Theoretical Physics,
Invited talk: “Black-Hole Binary Initial Data.” Presented at the workshop on Gravitational
Wave Physics at the Yukawa Institute for Theoretical Physics,
Invited talk:
“Black-Hole Binary Initial Data: Getting the Spin Right.” CTA Seminar on Theoretical Astrophysics and
General Relativity at the
Invited talk: “Black-Hole Binary Initial Data: Getting the Spin Right.” Numerical Relativity 2005: Compact Binaries at NASA’s Goddard Space Flight Center, 4 Nov. 2005.
Invited talk: “Status of Initial Data for Binary Black Hole
Collisions.” April APS Meeting in
Fetrow, Jacquelyn S.
Invited Presentation: “
Invited Presentation: “Systems Biology workshop for Educators.” The Protein Society 19th
Symposium,
Invited Seminar Speaker:
Guthold, Martin
Invited
talk: “The Viscoelastic
Properties of Single Fibrin Fibers.” Annual Technical Conference
2006, Society of Plastic Engineers,
Invited
talk: “The Visoelastic
Properties of Single Fibrin Fibers.” Department of Physics,
Invited
talk: “The Visoelastic
Properties of Single Fibrin Fibers.” Department of Physics,
Chairing
Platform session, “Molecular Mechansims & Force
Spectroscopy.”
Biophysical Society Annual Meeting,
Invited
talk: “The Extreme Viscoelastic
Properties of Single Fibrin Fibers.” Biophysical Society Annual Meeting,
Poster: (with Peng, L. and Cubicciotti, R. “Novel, Single-molecule
Methodology to Identify New Aptamers.” BIOPHYSICAL
JOURNAL 88 (2005): 65A-65A.
Paper: (with Liu, W.
H., Jawerth, L. M., Stephens, B. J., Hantgan, R., Lord, S., and Superfine, R.)
“Visualization and Mechanical Manipulations
of Individual Fibrin Fibers by Combined Microscope.” AFM/FM. BIOPHYSICAL JOURNAL 88
(2005): 155A-155A.
Presentation: “A Novel Aptamer
Discovery Method.” NANOBIOTECHNOLOGY IN
NORTH CAROLINA 2006,
Convocation speaker (two talks): “The Visoelastic Properties of Single Fibrin Fibers” and
“Nanotechnology-Hype Promise and Dangers.”
Holzwarth, Natalie A.W.
Poster: (with Tang, P. and Salsbury Jr.) “The Electronic Structure of z-BEDT-TTF×PF6 – a Comparison of Self-consistent Field and Hubbard Model Analyses.” 17th Annual Workshop on Recent Developments in Electronic Structure Methods (ES2005), Cornell University, Ithica, NY, 23-26 June 2005. (Note: this information was not included in last year’s report.)
Presentation: (with Tang, Ping) “Comparison of the Electronic Structures of Four Crystalline Phases of FePO4” 2006 March meeting of the American Physical Society, Baltimore, MD, 13-17 March 2006.
Presentation: (with Abraham, Y. B.) “Surface Electronic Structure of H/Li(110) -- an Application of the Semi-infinite Method.” 2006 March meeting of the American Physical Society, 13-17 March 2006.
Poster: (with Hodge,
W.B. and Kerr, W. C.) “
Kerr, William C.
Paper: (with Hodge, W.
B. and Holzwarth, N. A. W.) “
Paper: (with Rave, M.
J.) “
Kim-Shapiro, Daniel B.
Presentation: (with
Presentation: (with Huang, J., Basu, S., Huang, Z., Hill, J., Shields, H., Azarov, L., Huang, K. T., Hogg, N., King, S. B., Gladwin, A.T.) “Nitrosothiol Formation in the Reaction of Nitrite and Hemoglobin.” FREE RADICAL BIOLOGY AND MEDICINE 39: S100-S100 Suppl. 1, 2005, Free Radical Society Meeting, Austin TX, November 2005.
Presentation: “GC/MS Analysis of Hydroxyurea Metabolism to Hydroxylamine by Rat Liver.” Huang, J. M., Kim-Shapiro, D. B., King, S. B.) ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 229: U208-U208 516-MEDI Part 2, 13 March 2005.
Presentation: “Nitrogen Oxides in the Nitrite/Hb Reaction.” The NIH Meeting, Role of Nitrite in Physiology, Pathophysiology, and Therapeutics, conference co-organizer and invited speaker, September 2005.
Macosko, Jed
Presentation: (with Holzwarth, George M., Rockford, Jean, Fallesen, Todd
L., Newbern, Jason)
“A Handy Tool to Observe
in vivo Molecular Motor Function: Differential Interference Contrast Microscopy
with Background Subtraction.” 50th
Annual Biophysical Society Meeting,
Salsbury, Freddie R.
Presentation: (with Knaggs, M. H., Edgell, M. H., and Fetrow, J. S.) “Insights into Early Events in CheY Relaxation from Active to Inactive Form from MD Simulation.” Protein Society National Meeting, August 2005.
Williams, Richard T.
Invited Plenary Lecture:
“Fast Processes, Coherent Response, and Metamaterials: Scintillating New Possibilities.” 8th International Conference on
Inorganic Scintillators and their Use in Scientific
and Industrial Applications,
Alushta,
III.
Editorships, Offices, Consultancies
Carlson, Eric D.
Textbook reviewer for Tipler and Llewellyn, time of order 20 hours total.
Fetrow, Jacquelyn S.
Invited Conference Presentations:
§
21st Annual
Perspectives in Biology Symposium, Nov 11-12, 2005,
§
§
The Protein Society 19th
Symposium. Systems Biology Workshop for Educators. July 30-August 3, 2005,
Invited Seminars:
§
Kim-Shapiro, Daniel B.
Journals Reviewed for:
|
1. Biophysical Journal 2. Journal of Biological Chemistry 3. Blood 4. Journal of Pediatric
Hematology/Oncology 5. Circulation Research 6. Medical Science Monitor 7. Free Radical Biology and
Medicine 8. Cell 9. FEBS Journal 10. Proteins |
11. Inorganic Chemistry 12. British Journal of Haematology 13. FEBS Letters 14.
Journal of Physical Chemistry 15
Analytica Chimica Acta 16. Journal of Theoretical Biology 17
Biochemistry 18. Journal of Chemical
Physics 19.
Nitric Oxide: Biology and Chemistry 20. Bioelectromagnetics |
Consulting: NIH: ZRG1-HEME-C-(50R), Blood substitutes and adhesion molecules, Bioengineering Research Partnerships, 17 March 2006.
Consulting: FDA: Blood Products Advisory Committee Site Visit group, FDA labs on the NIH campus, 6 October 2005.
Macosko, Jed
Consultant for Aperon, a medical device Start-up Company (1.5 hours/week)
Salsbury, Freddie R.
Ad hoc reviewer: Journal of Physical Chemistry, Proteins: Structure, Function and Bioinformatics, Nucleic Acids Research, the Journal of the American Chemical Society, Molecular Physics, and the Journal of Computational Chemistry
Williams, Richard T.
Member Editorial Advisory Board for
Member Editorial Advisory Board of
Materials Science Foundation (Trans Tech Publishing,
Organizer and Chairman of 7th
International Conference on Excitonic Processes in
Condensed Matter,
Organizer and Chairman of 9th
International Conference on Inorganic Scintillators
and their Applications,
Member of International Advisory Committees for:
International Conference on Defects in Insulating Materials
International Conference on Inorganic Scintillators and Applications
International Conference on Luminescent Detectors and Transformers of Radiation
European Topical Conference on Defects in Insulating Materials
Anderson, Paul R.
$63,376 “Studies
of Classical and Quantum Effects in Gravity.”
National Science
Foundation. Two
year period.
Bonin, Keith D.
$100,000 “Kinesin
Velocity-Force Curves When 1,2 or 3 Motors Transport a
Single
Load.” National
Carroll, David L.
$700,000 “Negative Index Materials.” DoD, AFSOR
$60,000 “Nanoscience
Approaches to Bone Infection.” OREF
$20,000 “Nanotechnology Approaches to Cancer
Therapeutics.” GAC (NCI)
$500,000 “Agile Response Coatings.” DoD, AFOSR
Fetrow, Jacquelyn S.
$220,000 “Algebraic and Statistical Models of Redox Signaling.”
NIH-NIGMS (total amount for 1 year)
$154,419 “Profiling of Redox-Sensitive
Signaling Proteins.” NIH-NCI
(total amount for 1
year)
$170,967 “Integrated Process for Functional Site
Feature Analysis.”
NSF MCB (total amount for 1 year)
Kim-Shapiro, Daniel B.
$518,400 “Effects of Nitric Oxide and Nitrite in
Sickle Cell Blood.” NIH
(2004-2009)
$1,563,320 “Effects of Nitric Oxide in Sickle Cell
Blood.” NIH
(2002-2007)
Williams, Richard T.
$5,000 “Metamaterials
for Negative Refractive Index.” Air Force Office
Scientific Research (MURI grant) (with David
Carroll), for 5 years
V. Awards for Distinguished Teaching, Research, or Professional
Activities
PHYSICS DEPARTMENT
Cook, Gregory B.
“Z. Smith
Reynolds Foundation Fellow,” 2005-2007
“KITP
Scholar,” 2006-2008
“WFU
Excellence in Research Award,” 2005-2006
Fetrow, Jacquelyn S.
“Innovative Teaching Award” (for
Bioinformatics course, developed with David John), Center for Teaching and
Learning,
Kim-Shapiro, Daniel B.
“NIH
Independent Scientist Career Award (K02),” 2004-2009