SUMMARY OF FACULTY ACTIVITIES
REPORT
FOR
I. Publications, Performances,
Exhibits
III.
Editorships, Offices, and Consultancies
I. Publications, Performances, Exhibits
PHYSICS DEPARTMENT
Anderson, Paul R.
(with R. Balbinot and A. Fabbri) “Cutoff Anti–de Sitter Space/Conformal-Field-Theory Duality and the Quest for Braneworld Black Holes.” Phys. Rev. Lett. 94 (2005): 061301.
Bonin, Keith D.
(with W. Andrew Shelton and Thad G. Walker) “Nonlinear Motion of Optically Torqued”. Phys. Rev. E 71, (2005): 036204. This paper was honored by being chosen for inclusion in the March 2005 issue of the Virtual Journal of Biological Physics by editor Robert Austin and it was also selected for inclusion in the March 2005 issue of the Virtual Journal of Nanoscience and Technology by editor David Awschalom.
(with D. Hill, M. Plaza,
and G. Holzwarth)
“Vesicle Transport in PC12 Neurites: Forces
and Saltatory Motion.” Eur. Biophys. J.
(with W. Andrew Shelton
and Thad G. Walker) “Light-torqued Nanomotors Free of a Surface.” Optical Trapping and Optical Micromanipulation, edited by Kishan Dholakia, Gabriel C.
Spalding, Proceedings of SPIE Vol. 5514 (SPIE, Bellingham, WA, 2004): 678-686.
Carroll, David L.
(with Scott Webster, Marisol Reyes-Reyes, Xavier Pedron, Román López-Sandoval, and Mauricio Terrones) “Enhanced Nonlinear Transmittance by Cooperative Nonlinear Mechanisms: a Reverse Saturable Absorbing Carbocyanine Dye Blended with Nonlinear Scattering Carbon Nanotubes.” Accepted to Advanced Materials (2005).
(with Kyungkon Kim,
Scott Webster, Nicole Levi, Mauricio R. Pinto, and Kirk
(with Kyungkon Kim,
Scott Webster, Nicole Levi, Mauricio R. Pinto, and Kirk
(with S. Roth)
“One-Dimensional Metals: Physics and Materials
Science,” 2nd edition.
VCH Press,
(Ed. with P. Bernier, G.-T. Kim,
and S. Roth) “Nanotube Based Devices.” From the MRS Symposium
Proceedings Series,
(with Nicole Levi, Richard Czerw, Shuya Xing, and Preethi Iyer) “Properties of Polyvinylidene Difluoride-Carbon Nanotube Blends.” Nanoletters (2004).
(with Sihai Chen) “Silver Nanoplates: Size Control in Two Dimensions and Formation Mechanisms.” J. Phys. Chem. B 108 (2004): 5500-5506.
(with R. Czerw and B. S. Harrison) “Carbon Nanotube – Poly 3-octylthiophene Composite Photovoltaic Cells.” Nanotechnology (2004).
(with R. Czerw, H. S. Woo, Y. B. Kim, and J. W. Park) “Nanoscale Observation of Failures in Organic Light-emitting Diodes.” Journal of Applied Physics, Vol. 96, No. 1 (2004): 641 – 644.
(with R. Czerw and S. Webster) “Polymer– Nanotube Composites for Transparent, Conducting Thin Films.” Synthetic Metals (2004).
(with S. Webster, R. G. Grant, R. Czerw, J. Liu, M. Terrones, and
(with Sihai Chen, S. Webster, R. Czerw, and Jianfeng Xu) “Morphology Effects on the Optical Properties of Silver Nanoparticles.” Journal of Nanoscience and Nanotechnology 4(3) (2004): 254-259.
(with S. Webster, R. Czerw, R. Nesper, J. DiMaio, J.-F. Xu , and J. Ballato) “Optical Properties of Vanadium Oxide Nanotubes.” Journal of Nanoscience and Nanotechnology 4(3) (2004): 60 – 64.
(with J. Xu, M. Xiao, and R. Czerw) “Optical limiting and Enhanced Optical Nonlinearity in Doped Carbon Nanotubes.” Chem. Phys. Lett. 389 (2004): 247-250.
Cook, Gregory B.
(with Mark D. Hannam) “Conformal Thin-sandwich Puncture Initial Data for Boosted Black Holes.” Phys. Rev. D 71 (2005): pp. 084023/1—12.
(with Harald P. Pfeiffer) “Excision Boundary Conditions for Black-hole Initial Data.” Phys. Rev. D 70 (2004): pp. 104016/1—24.
Fetrow, Jacquelyn S.
(with E. E. Allen, D. J. John, and S. J.
Thomas) “Heuristic Dependency
Conjectures in Proteomic Signaling Pathways.” Proceedings
of the 43rd Annual Association for Computing Machinery Southeast
Conference (Victor A. Clincy, ed.)
Guthold, Martin
(with
Kerr, William C.
(with M. J. Rave and L. A. Turski) “Phase-Space
Dynamics of Semiclassical Spin-½ Bloch Electrons.” Physical Review Letters,
Vol. 94 (
(with M. J. Rave) “
(with A. J. Graham) “Nucleation Rate of
Critical Droplets on an Elastic String in a f6
Potential.” Physical
Review B: Condensed Matter and
Materials Physics, Vol. 70, (
Kim-Shapiro, Daniel B.
Referred Journal Articles
(with Mark T. Gladwin, Rakesh P. Patel, and Neil Hogg) “The Reaction Between Nitrite and Hemoglobin: The Role of Nitrite in Hemoglobin-mediated Hypoxic Vasodilation.” J. Inorg. Biochem. 99 (2005): 237-246.
(with Kejing Chen, Samir K. Ballas, and Roy R. Hantgan) “Aggregation of
(with Rakesh P. Patel, Alan N. Schechter, Mark T. Gladwin, Richard O. Cannon, and Neil Hogg) “How do Red Blood Cells Dilate Blood Vessels?—Reply.” Circ. Res. 95, (2004): e10.
(with Christian J. Hunter, André Dejam, Arlin B. Blood, Howard Shields, Roberto F. Machado, Selamawit Tarekegn, Neda Mulla, Andrew O. Hopper, Alan N. Schechter, Gordon G. Power, and Mark T. Gladwin) “Inhaled Nebulized Nitrite is a Hypoxia-sensitive NO-dependent Selective Pulmonary Vasodilator.” Nat. Med., 10 (2004): 1122-1127.
(with Virginia L Lockamy,
Howard Shields, and S.
Bruce King) “Iron Nitrosyl Hemoglobin Formation from the Reaction of
Hydroxylamine and Hemoglobin under Physiological Conditions.” Biochim. Biophys. Acta 1674
(2004): 260-267.
(with Jinming Huang and S. Bruce King) “Catalase-Mediated Nitric Oxide Formation from Hydroxyurea.” J. Med. Chem., 47 (2004): 3495-3501.
Macosko, Jed C.
(with H. Lu, D. Habel-Rodriguez, R. W. Keller, J. A. Brozik, and D. J. Keller) “Closing of the Fingers Domain Generates Motor Forces in the HIV Reverse Transcriptast.” J. Biol. Chem. 24;279(52) (Dec. 2004): 54529-32 doi:10.1074/jbc.M407193200.
“Molecular Machines”, ISCID Encyclopedia of Science and Philosophy (July 2004).
Salsbury, Freddie R.
(with M. S. Lee and M. A. Olson) “An Efficient Hybrid Implicit/Explicit Solvent Method for Biomolecular Simulations that Uses A Generalized Born Reaction Field and Multigrid Enhancements.” J. Comp. Chem. (2004).
(with K. Drotschmann, R. P. Topping, and J. E. Clodfelter) “Mutations in the Nucleotide-binding Domain of MutS Homologs Uncouple Cell Death from Cell Survival.” DNA Repair, 3 (7) (2004):729-742.
(with L. R. Thomas, A. Henson, J. C. Reed, and A. Thorburn) “Direct Binding of FADD to the TRAIL Receptor DR5 is Regulated by the Death Effector Domain of FADD.” J. Bio. Chem. 279, 31 (2004).
(with M. S. Lee and C. L. Brooks III) “Constant pH-molecular Dynamics using Continuous Titration Coordinates.” Proteins: Structure, Function and Bioinformatics 56 (4) (2004): 738-752.
Williams, Richard T.
(with Gang Xiong, John Wilkinson, and K. R. Ucer) “Giant Oscillator Strength of Excitons in Bulk and Nanostructured Systems.” Journal of Luminescence 112 (2005): 1-6.
(with Gang Xiong, K. B. Ucer, J. Lee, D. Bhattacharyya, J. Metson, and P. Evans) “Donor-acceptor Pair Luninescence of Nitrogen-implanted ZnO Single Crystal.” Journal of Applied Physics 97 (2005): 043528-43532.
(with Yong Qiu and K. B. Ucer) “Formation Time of a Small Electron Polaron in LiNbO3: Measurements and Interpretation.” Phys. Stat. Sol. (c) 2 (2005): 232-235.
(with John Wilkinson and K. B. Ucer) “The Oscillator Strength of Extended Exciton States and Possibility for very Fast Scintillators.” Nuclear Instruments and Methods in Physics Research A 537 (2005): 66-70.
(with John Wilkinson and K. B. Ucer) “Picosecond Excitonic Luminescence in ZnO and Other Wide-gap Semiconductors.” Radiation Measurements 38 (2004): 501-505.
II. Papers and Presentations Presented at Professional Meetings
PHYSICS DEPARTMENT
Anderson, Paul R.
Presentation: “Infrared Effects
on the Stress-energy of Static Black Holes.”
Black Holes V Meeting,
Presentation: “Asymptotic
Behavior of the Stress-Energy Tensor for Scalar Fields in the
Presentation: “Asymptotic Behavior of the Stress-Energy
Tensor for Scalar Fields in the
Bonin, Keith D.
Paper: (with
Paper: (with
Carlson, Eric D.
Paper: “Stress-Energy Tensor for
a Fermion Field in Schwarzschild Spacetime.”
East Coast Gravity Meeting,
Carroll, David L.
Invited talk:
“Colloidal Crystals with Conjugated Systems.” American Chemical Society (Colloid Section),
Invited talk:
“Phase Coherence in Optical Power limiting phenomena.” ISOPL (International Society for Optical Power
Limiting)
Invited talk:
“Applications of Iron Filled Nanotubes.” American Chemical Society,
Invited talk: “Advances in Nanocomposite Based Devices.” International Conference on Synthetic Metals,
Invited talk: “Advances in
Organic Device Physics.” American
Physical Society Regional Meeting,
Invited talk:
“Optical Limiting in Carbon Nanotubes and
their Variants.” Optical
Society of
Invited talk: “Advances in Nanocomposite-based
Devices.” Nanotec’
04,
Invited talk: “Optical Limiting
in Carbon Nanotubes: Materials Modifications.” ISOPL (International Society for Optical
Power Limiting),
Cook, Gregory B.
Invited talk:
“Black-hole Binary Initial Data.” 8th Eastern Gravity Meeting,
Fetrow, Jacquelyn S.
Presentation: “Symposium on Computational Methods as
Aids in Drug Design.”
Presentation: “National Capital Region Biomedical
Engineering and Science Research.” Virginia Tech,
Invited seminar:
“Women Leaders in Science Seminar Series.”
University of California/San Francisco,
Invited seminar:
“St. Jude’s Children’s Hospital Bioinformatics Seminar Series.”
Invited seminar:
“Center for Redox Biology Seminar Series.”
Presentation: “Triangle
Biophysics Symposium.”
Guthold, Martin
Invited speaker:
Invited speaker:
Invited speaker:
Two poster presentations: 49th Annual Biophys.
Society meeting,
Poster: IMAT Principle
Investigator meeting (People who won a grant under that funding mechanism),
Poster: XVIIIth
International Fibrinogen Workshop,
Speaker: XVIIIth
International Fibrinogen Workshop,
Chair: Nanoscience invited section of
SESAPS Meeting,
Invited panel member: Careers
2004, Get Networking!
Holzwarth, Natalie A. W.
Paper: (with Tang, Ping and Salsbury, Jr, Freddie R.) “The Electronic Structure
of ζ -BEDT-TTF•PF6; a Comparison of Self-consistent Field and Hubbard Model
Analyses.” The March
2005 Meeting of the American Physical Society,
Poster: (with Tang, Ping) “Comparison of the
Electronic Structures of Four Crystalline Forms of FePO4.” The March 2005 Meeting of
the American Physical Society in
Paper: (with Abraham, Yonas) “A Method
for Calculating Surface Electronic Structures using Semi-infinite Boundary
Conditions.” The March
2005 Meeting of the American Physical Society,
Kim-Shapiro, Daniel B.
Presentation: (with Azarov, Ivan, Huang, Kris T., Cass, Matthew, Basu, Swati, Cho,
Man, Nichols, James S., Gladwin, Mark T., and Hogg, Neil) “NO Uptake Rates of
Presentation: (with Huang, Jinming and King, S. Bruce) METABOLISM OF HYDROXYUREA TO NITRIC
OXIDE BY RAT LIVER FREE RADICAL BIOLOGY
AND MEDICINE, 37: 97 Suppl. 2 (2004), Free Rad. Biol. Med. Meeting,
Presentation: (with Huang, Z., Shiva,
S., Schechter, A., Ringwood, L., Irby, C., Cushenberry, C., Grant, P., Patel, R., Hogg, N., and Gladwin,
M.) FREE
RADICAL BIOLOGY AND MEDICINE 37: 20 Suppl. 2 (2004), Free Rad. Biol.
Med. Meeting,
Presentation: (with Azizi, Fouad, Kielbasa, Jerrold
E., Adeyiga, Adedoyin M., Maree, Rachel D., Yakubu, Mamudu, Shields, Howard, and King, S. Bruce) “NO Dissociation
Rates from Hemoglobin.” FREE RADICAL
BIOLOGY AND MEDICINE
37: 100 Suppl. 2 (2004), Free Rad. Biol. Med. Meeting,
Presentation: (with Azarov, Ivan, Huang, Kris T., Cass, Matthew, Maree, Rachel D., King, S. Bruce, Nichols, James S., Gladwin,
Mark T., and Hogg, Neil) “NO Uptake by Normal
and Sickle Red Blood Cells.” FREE RADICAL BIOLOGY AND MEDICINE 37: 209 Suppl.
2 (2004), Free Rad. Biol. Med. Meeting,
Presentation: (with Jeffers, Anne,
Xu, Xiuli, Cho, Man, Huang, Kris T., King, S., Hogg, Neil, Patel, Rakesh P., and Gladwin, Mark T.) “Nitrite Activation of sGC in Blood.” FREE RADICAL BIOLOGY AND MEDICINE 37: 84 Suppl.
2 (2004), Free Rad. Biol. Med. Meeting,
Presentation: (with Huang, Kris,
Keszler, Agnes, Huang, James, Patel, Neil K., Patel, Rakesh, Gladwin, Mark, and Hogg, Neil) “Mechanistic Re-examination of the Reaction
between Nitrite and Hemoglobin.” REE
RADICAL BIOLOGY AND MEDICINE
37: 82 Suppl. 2 (2004), Free Rad. Biol. Med. Meeting,
Invited talk: (with Hogg, N.,
Patel, R. P., and Gladwin, M. T.) “What’s
Right about Nitrite?” Comparitive
Biochemistry and Physiology. SEB 2004 Conference,
Macosko, Jed C.
Presentation: (with Oritz, T. P. et al) “Stepping Statistics of Single HIV-1 Reverse Transcriptase Molecules during DNA Polymerization.” 59th ACS Northwest and Rocky Mountain Regional Meeting, May 2004.
Presentation: (with Lu, et al.) “Closing of the Fingers Domain Generates Motor Forces in the HIV Reverse Transcriptase.” 59th ACS Northwest Rocky Mountain Regional Meeting, May 2004.
Presentation: (with Basame, S. B. et al.) “ORF1P: Structure and Binding Specificity to RNA.” 59th ACS Northwest and Rocky Mountain Regional Meeting, May 2004.
Salsbury, Freddie R.
Invited seminar: “Constant-pH Molecular Dynamics.” Old Dominion University Department of Chemistry.
Invited seminar: “Electrostatic Analysis of Active Sites of CYS-modifiable Proteins.” Structural and Computational Biophysics Group, WFU.
Invited seminar: “Constant-pH Molecular Dynamics.” Center for Structural Biology “chatters”, WFU.
Invited seminar: (with Holzwarth, N. A. W., Tang, P., and Qualls, J. “The Electronic
Structure of Zeta-BEDT-TTF PF6; a Comparison of Self-consistent Field and Hubbard
Model Analyses.” The
March APS 2004 Meeting,
Posters: (with Knutson, S. A.,
Posters: “Sequence, Structure,
and Electrostatic Analysis of Sites of Cysteine Sulfenic Acid Modification in Proteins.” Knutson, S. A., Salsbury, Jr, F.,
William, Richard T. Williams
Invited talk:
“Molecular Dynamics of Finite-temperature Relaxation of Self-trapped Excitons to Defects in NaCl.” Physics Department Colloquium at
Keynote speaker: “Dynamics
Induced by Electronic Transitions:
Finite-temperature Relaxation of Self-trapped Excitons
to Defects in NaCl.”
10th International Conference on Desorption
Induced by Electronic Transitions,
Keynote speaker: “Giant
oscillator Strength of Excitons in Bulk and Nanostructured Systems.”
6th International Conference on Excitonic
Processes in Condensed Matter,
Invited talk: “Formation Time of
a Small Electron Polaron in LiNbO3: Measurements and Interpretation.” 15th International
Conference on Defects in Insulating
II. Editorships, Offices, and
Consultancies
PHYSICS DEPARTMENT
Carroll, David L.
Editorial Board, Proceedings of the Materials Research Society
Consultant, National Science Foundation
Consultant, Science Foundation of
Fetrow, Jacquelyn S.
Editorial Board, Proteins: Structure Function and Genetics
Board of Directors, Quantum Bio,
Guthold, Martin
Peer-reviewed papers for the journals:
Biophysics Journal
PNAS
Grant reviewing activities for federal granting agencies
Participated as a member in the following NIH study sections.
“Innovative technologies for the molecular analysis of
cancer”,
“Microscopic Imaging”,
“Microscopic Imaging”,
“Innovative technologies for the molecular analysis of
cancer”,
“Microscopic Imaging”, March 10,
Biology and Development of Ageing, March 23,
“Innovative technologies
for the molecular analysis of cancer”,
Kim-Shapiro, Daniel B.
Journals Reviewed for:
1. Biophysical Journal
2. Journal of Biological Chemistry
3. Blood
4. Journal of Pediatric Hematology/Oncology
5. Circulation Research
6. Medical Science Monitor
7. Free Radical Biology and Medicine
8. Cell
9. FEBS Journal
10. Inorganic Chemistry
11. British Journal of Haematology
12. FEBS Letters
13. Journal of Physical Chemistry
14 Analytica Chimica Acta
15. Journal of Theoretical Biology
16 Biochemistry
17. Journal of Chemical Physics
Note – Not listed as editorial board member on any of these. In some cases, listed as “official” reviewer. In other cases just does reviews.
Consultant, NIH Study Section: ZRG1 Heme-D 50/51, Hematology Bioengineering, Bioengineering Research Partnerships, 4/05.
Macosko, Jed C.
Editorial Board, Progress in Complexity, Information and Design (PCID)
Consultant, Aperson, a medical device Start-up Company
William, Richard T.
Editorial Board,
Editorial Board, Materials Science
Foundation (Trans Tech Publishing,
Organizer and Chairman of 7th International Conference on Excitonic Processes in Condensed Matter,
Member of International Advisory Committees for
International Conference on Defects in Insulating Materials
International Conference on Inorganic Scintillators and Applications
International Conference on Luminescent Detectors and Transformers of Radiation
European Topical Conference on Defects in Insulating Materials
IV. External
Grants Received
PHYSICS DEPARTMENT
Bonin, Keith D.
$75,000 “Optical Torquing and Nanofluidics.” Research Corporation
Carroll, David L.
$525,000 “Agile Response Coatings.” AFOSR
$100,000 “Postdoctoral Fellowship.” ACS
$453,000 “Scale Hierarchy.” AFSOR
$30,000 “Star Polymer OPV.” EIC
$30,000 “Surface Enhanced Raman.” EIC
$30,000 “Photovoltaics.” EIC
$9,000 “NSF NER.” NSF
$92,000 “Agile Response Coatings.” Picatinny Arsenal
$180,000 “Robust Display.” DARPA
Fetrow, Jacquelyn S.
$1,073,242 “Algebraic and Statistical of Redox Signaling.” NIH-NIGMS
1R01 GM075304 (total costs for 4 years)
$242,320 “Profiling of Redox-Sensitive Signaling Proteins.” NIH-NCI
1R01 GM075304 (total costs for 2 yers)
Guthold, Martin
$10,000 “Manipulation and Simultaneous Visualization of Individual Fibrin Fibers.”
Science Research Fund
Holzwarth