SUMMARY OF FACULTY ACTIVITIES
REPORT
FOR
I. Publications, Performances,
Exhibits
III. Editorships, Offices,
and Consultancies
I. Publications, Performances, Exhibits
Anderson, Paul R.
(with B. L. Hu) “Radiation Reaction in Schwarzschild Spacetime: Retarded Green's Function via Hadamard-WKB Expansion.”
Phys. Rev. D 69 (2004): 064039.
(with Eric D. Carlson, William H. Hirsch,
Benedikt Obermayer, and
Peter B. Groves) “Stress-Energy Tensor
for a Massless Spin ˝ Field in Static Black Hole Spacetimes.” Phys.
Rev. Lett. 91 (2003): 051301.
Bonin, Keith D.
(with D. Hill, M. Plaza, and G. Holzwarth) “Vesicle Transport in PC12 Neurites: Forces and Saltatory Motion.” Eur. Biophys J. 33, (April 2004): DOI: 10.1007/s00249-004-0403-6.
(with W. Happer) “Atomic Spectroscopy.” The Optics Encyclopedia: Basic Foundations and Practical Applications, eds. T. G. Brown, K. Creath, H. Kogelnik, M. A. Kriss, J. Schmit, and M. J. Weber (Wiley-VCH, New York, 2003), (Nov. 2003): pp. 187-233.
Carlson, Eric D.
(with William H. Hirsch, Benedikt Obermayer, Paul R. Anderson, and Peter B. Groves) “Stress-energy Tensor for Massless Spin-1/2 in Static Black Hole Spacetimes.” Phys. Rev. Lett. 91 (2003): 051301.
Carroll, David L.
(with Jianfeng Xu
, Min Xiao , and R. Czerw) “Optical Limiting and Enhanced
Optical Nonlinearity in Boron-doped Carbon Nanotubes.”
Chemical Physics Letters 389
(2004): 247–250.
(with R. Czerw, and J. Liu) “Electronic Effects in Scanning Tunneling Microscopy
of Metal-filled Multiwalled Carbon Nanotubes.” New Journal of Physics 6 (2004): 31.
(with Sihai Chen, Jianfeng Xu, and Richard Czerw) “Nanoengineering Optical Properties of
Silver Nanoparticles through Shape Control.” Journal of Nanoscience and Nanotechnology (accepted for June issue
2004).
(with J.-F. Xu, R. Czerw, J. DiMaio, J. Ballato, and R. Nesper) “Optical Properties
of Vanadium Oxide Nanotubes.” Nanoscience and Nanotechnology (accepted for June issue 2004).
(with Roth) “One Dimensional Metals.”
(with S. Chen, Z.L. Wang, J. Ballato,
and
(with P. Yang and J. Ballato) “AC Conduction Mechanism of SrBi2TaO9 Thin Films
Below Room Temperature.” Journal of Materials
Science Letters 22 (2003): p. 5 – 7.
(with N. Chakrapani, Y. Zhang, Y. Y. Choi,
P. M. Ajayan, S. Nayak, and
J. A. Moore) “Adsorption
of Acetone on Carbon Nanotubes.” Journal of Physical
Chemistry B, 107 (35) (
(with R. Czerw, H.S. Woo, and S.
Webster) “Failure
Modes in Organic Light Emitting Diodes.” Advanced Materials
(accepted for May 2003).
(with Y.-M. Choi, D.-S. Lee, R. Czerw, N. Grobert, M. Terrones, M.
Reyes-Reyes, H. Terrones, P.M. Ajayan, S. Roth, and
Y.-W. Park) “Nonlinear Behavior in the Thermopower of Doped Carbon Nanotubes
Due to Strong Localized States.” Nanoletters, 3 (6)
(June 2003): 839 – 842.
(with J. DiMaio, S. Rhyne, Z. Yang, K. Fu, R. Czerw,
J.-F. Xu,
S. Webster, Y.-P. Sun, and John Ballato) “Transparent Silica
Glasses Containing single Walled Carbon Nanotubes.” Information Sciences
149 (2003): 69-73.
(with S. Webster,
J. Maultzsch, C. Thomsen, J. Liu, R. Czerw, M. Terrones, F. Adar, C.
John, and A. Whitely) “Raman
Characterization of Nitrogen Doped Multiwalled Carbon
Nanotubes, Nanotube
Based Devices.” Eds. Bernier, Carroll,
Kim, Roth, MRS symposium proceedings Vol. 772,
(2003): 129-134.
(with J. Liu, R. Czerw, S. Webster,
J. H. Park, Y. W. Park, and M. Terrones) “Advances in CNx Nanotube Growth, Nanotube Based
Devices.” Eds. Bernier, Carroll, Kim,
Roth, MRS symposium proceedings Vol. 772,
(2003): 105 – 111.
Cook, Gregory B.
(with Mark D. Hannam, Charles E. Evans, and Thomas W. Baumgarte) “Can a Combination of the Conformal Thin-sandwich and Puncture Methods Yield Binary Black Hole Solutions in Quasiequilibrium?” Phys. Rev. D 68 (2003): pp. 064003.
Czerw, Richard
(with J-W Liu and D. L. Carroll) “Electronic Effects in Scanning Tunneling Microscopy
of Metal-filled Multiwalled Carbon Nanotubes.” New J. Phys. 6 (
(with Sihai Chen, Scott Webster, Jianfeng Xu, and David L. Carroll) “Morphology Effects on the Optical Properties of Silver Nanoparticles.” J. Nanosci. Nanotechno. Vol. 4 (3) (2004): 254-259.
(with S. Webster, R. Nesper, J. DiMaio, J.-F. Xu, J. Ballato, and D. L. Carroll) “Optical Properties of Vanadium Oxide Nanotubes.” J. Nanosci. Nanotechno. Vol. 4 (3) (2004): 260-264.
(with J. Xu,
M. Xiao, and D. L. Carroll)
“Optical Limiting and Enhanced Optical Nonlinearity
in Boron Doped Carbon Nanotubes.” Chemical Physics Letters
389 (2004): 247-250.
(with Y. M. Choi, D. S. Lee, P. W. Chiu, N. Grobert, M. Terrones, M. Reyes-Reyes, H. Terrones, J. C. Charlier, P. M. Ajayan, S. Roth, and D. L. Carroll, Y. –W. Park) “Nonlinear Behavior in the Thermopower of Doped Carbon Nanotubes Due to Strong, Localized States.” Nano Letters 3(6) (2003): 839-842.
(with S. Webster, D. L. Carroll, SMC Vieira, P. R. Birkett, C. A. Rego, and S. Roth) “Tunneling Microscopy and Spectroscopy of Multiwalled Boron Nitride Nanotubes.” Appl. Phys. Lett. 83 (8) (2003): 1617-1619.
Proceedings:
(with Benjamin S. Harrison, David Rickard, Wenhua Liu, Martin Guthold, and David L. Carroll) “Enhanced Conductivity of PEDOT-PSS Blended with Non-conductive Polymers and Single-walled Carbon Nanotubes.” Polymer Preprints (American Chemical Society, Division of
Polymer Chemistry) 45, no. 1 (2004): 153.
(with J. Liu, S. Webster, D. L. Carroll, J. H. Park, Y. W. Park, and J. Terrones) “Advances in CNx Nanotube Growth.” Materials Research Society Symposium Proceedings Vol. 772 (2003): M2.5.1-M2.5.7.
(with S. Webster, J. Maultzsch, C. Thomsen, J. Liu, M. Terrones, F. Adar, C. John, A. Whitley, and D. L. Carroll) “Raman Characterization of Nitrogen Doped Multiwalled Carbon Nanotubes.” Materials Research Society Symposium Proceedings Vol. 772 (2003): M7.8.1-M7.8.6.
Jacquelyn S. Fetrow
(with S. M. Baxter, J. S. Rosenblum, S. T. Knutson, M. R. Nelson, J. S. Montimurro, J. A. Di Gennaro, J. A. Speir, and J. J. Burbaum, J.J.) “Synergistic Computational and Experimental Proteomics Approaches for more Accurate Detection of Active Serine Hydrolases in Yeast.” Mol. Cell Proteomics 3(3) (March 2004): 209-25.
(with S. A. Cammer, B. T. Hoffman, J. A. Speir, M. Canady, M. R. Nelson, S. T. Knutson, M. Gallina, and S. M. Baxter) “Structure-based Active
Site Profiles for Genome Analysis and Sub-family Classification.” J. Mol. Biol. 334(3)
(
(with S. Herrgard, S.
A. Cammer, J. A. Speir, B.
T. Hoffman,
(with H. Zhou, M. Gallina, H. Mao, S. F. Betz, and P. J. Domaille) “1H, 13C, and 15N Resonance Assignments and Secondary Structure for the Human Protein Tyrosine Phosphatase, PRL-2.” J. Biomol. NMR. 27(4) (2003): 397-398.
Book chapter:
(with S. Baxter and
Patent allowed:
(Inventors: J. Skolnick and J. F. Fetrow) “Methods and
Systems for Predicting Protein Function.”
(issued
Guthold, Martin
(with R. M. Taylor II, D. Borland, F. P. Brooks, Jr., M. Falvo, T. Hudson, K. Jeffay, G. Jones, D. Marshburn, S. J. Papadakis, L.-C. Qin, A. Seeger, F. D. Smith, D. H. Sonnenwald, R. Superfine , S. Washburn, C. Weigle, M. C. Whitton, P. Williams, L. Vicci and W. Robinett) “Visualization and Natural Control Systems for Microscopy.” Visualization Handbook, C. J. a. C. Hansen (2003).
Article:
(with C. Rivetti) “Single DNA Molecule Analysis
of Transcription Complexes.” Method. Enzymol. 371 (2003): 34-50.
Holzwarth, George M.
(with D. B. Hill,
Holzwarth, Natalie A. W.
(with Ping Tang) “Electronic Structures of FePO4, LiFePO4, and Related Materials.” Physical Review B 68 (2003): 165107.
Kim-Shapiro, Daniel B.
Referred Journal Articles:
“Hemoglobin-nitric Oxide Cooperativity: Is NO the Third Respiratory Ligand?” Free Rad. Biol. Med. 36 (2004): 402-412.
(with Kenyatta Cosby, Kristine S. Partovi, Jack H. Crawford, Rakesh P. Patel, Christopher D.Reiter, Sabrina Martyr, Benjamin K. Yang, Myron A. Waclawiw, Gloria Zalos, Xiuli Xu, Kris T. Huang, Howard Shields, Alan N. Schechter, Richard O. Cannon III, and Mark T. Gladwin) “Nitrite Reduction to Nitric Oxide by Deoxyhemoglobin Vasodilates the Human Circulation.” Nat. Med. 9 (2003): 1498 – 1505.
(with Xiuli Xu, Man Cho, Netanya Y. Spencer, Neil Patel, Zhi Huang, Howard Shields, S. Bruce King, Mark T. Gladwin, and Neil Hogg) “Measurements of Nitric Oxide on the Heme Iron and -93 Thiol of Human Hemoglobin During Cycles of Oxygenation and Deoxygenation.” Proc. Natl. Acad. Sci. USA 100 (2003): 11303-11308.
(with Jinming Huang, Zhou Zou, Samir K. Ballas, and S. Bruce King) “Hydroxyurea Analogs as Kinetic and mechanistic Probes of the Nitric Oxide Producing Reactions of Hydroxyurea and Oxyhemoglobin.” J. Med. Chem. 46 (2003): 3748-3753.
(with Virginia L. Lockamy, Jinming Huang, Howard Shields, Samir K. Ballas, and S. Bruce King) “Urease Enhances the Formation of Iron Nitrosyl Hemogolobin in the Presence of Hydroxyurea.” Biochim. Biophys. Acta 1622 (2003): 109-116.
(with Zhi Huang, Leigh Hearne, Cynthia E. Irby, S. Bruce King, and Samir K. Ballas) “Kinetics of Increased Deformability of Deoxygenated Sickle Cells upon Oxygenation.” Biophys. J. 85 (2003).
Salisbury, Freddie R.
(with M. S. Lee, M. Feig,
and C. L. Brooks) “New
Analytic Approximation to the Standard Molecular Volume Definition and its Application
to Generalized Born Calculations.”
Journal of Computational Chemistry 24
(
(with M. S. Lee, M. Feig,
and C. L. Brooks) “New
Analytic Approximation to the Standard Molecular Volume Definition and its Application
to Generalized Born Calculations.”
Journal of Computational Chemistry 24
(
(with W. G. Han, L. Noodleman,
and C. L. Brooks) “Temperature-dependent
Behavior of Protein-chromophore Interactions: A Theoretical
Study of a Blue Fluorescent Antibody.” Chemphyschem 4 (
Williams, Richard T.
(with L. Grigorjeva, D. K. Millers, V. Pankratov, R. I. Eglitis, E. A. Kotomin, and G. Borstel) “Experimental and Theoretical Studies of Polaron Optical Properties in KNbO3 Perovskite.” State Communications 129 (2004): 691-696.
(with Gang Xiong,
John Wilkinson, Jacob Lyles, and K. B. Ucer) “Luminescence and Stimulated
Emission in Zinc Oxide Nanoparticles, Films, and
(with A. I. Khudobenko, A. N. Zherikhin, J. Wilkinson, K. B. Ucer, G. Xiong, and V. V. Voronov) “Laser Deposition of ZnO Thin Films on Silicon and Sapphire Substrates.” Quantum Electronics 33 (2003): 975-980.
Anderson, Paul R.
Invited talk: “Using the
Euclidean Green's Function and the WKB Approximation to Obtain the DeWitt-Schwinger Expansion for the Part of the Retarded Green's
Function, v(x,x'), that Contributes to the Tail Term
in the Radiation Reaction Force”. Capra
Radiation Reaction Meeting,
Invited talk: “Linear
Response Theory and the Validity of the Semiclassical
Approximation.” de Sitter Days Workshop, Fermi National Accelerator Laboratory,
Invited talk: “Stress-Energy Tensor for the Massless Spin 1/2 Field in Schwarzschild, Reissner-Nordstrom, and Extreme Reissner-Nordstrom Spacetimes.” Tenth Marcel Grossmann Meeting on General Relativity, Rio de Janeiro, Brazil, 20-26 July 2003.
Bonin, Keith D.
Presentation: (with G. Holzwarth, D. B. Hill, and
Invited talk: (with A. Shelton and T. G.
Walker) “Light-torqued Nanomotors in a Standing
Wave.” International Symposium on
Clusters and Nano-Assemblies,
Carroll, David L.
Invited talk: “Boron Nitride Nanotubes.” International
Conference on Defects in Insulators, Rega
Invited talk:
“Charge Transfer Composites: Advances in Organic Electronics.” International Conference on Synthetic Metals,
Invited talk:
“Charge Transfer Composites: Advances in Organic Electronics.” Defense Nanotechnology Workshop, Maui
(
Invited talk: “Charge Transfer
Composites: Advances in Organic Electronics.”
Herasus Workshop on Carbon Nanotubes,
Bad
Invited talk:
“Matrix Nanocomposites for Organic Electronic
Applications.” Nanotec’ 03,
Invited talk:
“Organic Photonics and Nanocomposites.” SPIE/OSA,
Invited talk: “Boron
Nitride Nanotubes.” American Ceramics Society (ACerS),
Invited talk:
“Doping of Carbon Nanotubes.” European Materials Research Society Meeting,
Presentations: (with Gwin Lui, Scott Webster, and Richard Czerw) “Growth of N-doped Nanotubes.”
MRS,
Presentations: (with Scott Webster) “Raman Spectroscopy of B-doped Nantubes.” MRS,
Presentations: (with Kyungkon Kim) “Photonic
Presentations: (with Scott Webster)“Raman
Spectroscopy of Doped Nanotubes.” Nanotec ’03, 2003.
Presentations: (with Richard Czerw) “Nanotube Based Optical Sensors.” Herasus Workshop on Carbon Nanotubes, 2003.
Presentations: (with B. Harrison) “Enhanced Conductivity in Polymer Blends
Using Carbon Nanotubes.” ACS, 2003.
Cook, Gregory B.
Invited talk: “Generating Initial Data for Interacting Compact Binaries.” KITP Conference on Gravitational Interaction of Compact Objects, University of California-Santa Barbara, Summer 2003.
Czerw, Richard
Presentation:
(with T. Smith, L. Webb, and D. L. Carroll) “Applications of Nanoscience
to Medicine & Orthopaedics.”
Presentation:
(with S. Webster, T. Tiano, D. L. Carroll) “Carbon Nanotube Photosensors.” Heraus seminar Carbon Nanotubes, Bad
Fetrow, Jacquelyn S.
Invited talk: “Combining Computational and Chemical Approaches to Proteome Analysis—serine Hydrolases in Yeast.” IPAM Workshop on Structural Proteomics, UCLA Institute for Pure and Applied Mathematics, 10-14 May 2004.
Invited talk:
“Combining Computational and Chemical Approaches to Proteome Analysis.” Gordon Research Conference on Enzymes,
Co-enzymes, and Metabolic Pathways,
Guthold, Martin
Keynote speaker: “How Bio and
Nanotechnology Provide New Insights into the Properties of Fibrin Fibers, the
Principle Components of Blood Clots.” North Carolina Academy of Sciences meeting,
Poster presentation: (with W. Liu,
R. Hantgan, J. Mullin, S. Lord, R. Superfine, and R. Taylor) “Mechanical Properties
of Individual Fibrin Fibers.” 48th Annual
Biophysical Society meeting,
Poster presentation: (with L. Peng and R. Cubicciotti) “Novel, Single-molecule
Methodology to Identify New Aptamers.” 48th Annual Biophysical Society meeting,
Poster presentation: (with L. Jawerth, W. Liu, M. Falvo, R.
Superfine, S. T. Lord, D. A. Erie, D. Marshburn, and R.
M. Taylor II) ”Simultaneous AFM/optical Microscopy
Study of Fibrin Fiber Strength.” 48th Annual Biophysical Society meeting,
Holzwarth, George M.
Invited talk: (with David B.
Hill,
Invited talk:
“Velocities and Forces of Molecular Motors in Live Cells.” Physics Department Seminar,
Holzwarth, Natalie A. W.
Contributed talk: (with Yonas Abraham) “A Method for Calculating Surface Electronic Structures Using Semi-infinite
Boundary Conditions.” March Meeting of the
American Physical Society in
Poster presentation: (with W. B.
Hodge and W. C. Kerr) “Pair State Analysis of the Hubbard Hamiltonian in One-Dimension.” March Meeting of the
American Physical Society,
Poster presentation: (with Ping
Tang) “Electronic
Structures of Materials Related to LixFePO4 and Their Use
in Rechargeable Batteries.” 15th Annual Workshop on Recent
Developments in Electronic Structure Methods,
Poster presentation: (with Yonas Abraham) “Analysis of Surface Calculation Methods
in a Semi-infinite Geometry.” 15th Annual Workshop on Recent
Developments in Electronic Structure Methods,
Kerr, William C.
Presentation: (with M. J. Rave) “Exact Calculation
of Berry’s Phase for an Electron in a Simple 1-D System.” American Physical Society Meeting,
Presentation: (with W. B. Hodge
and N. A. W. Holzwarth) “Pair State Analysis of the Hubbard
Hamiltonian in One-Dimension.” American
Physical Society,
Kim-Shapiro, Daniel B.
Presentation: (with V. L. Lockamy, J. M. Huang, M. Yakubu, H.
Shields, S. K. Ballas, and S. B. King, “The Search for the
Mechanism of NO Release in Hydroxyurea Therapy.” Annual Meeting of the Biophysical Society,
Presentation: (with F. Azizi, A. M. Adeyiga, J. E. Kielbasa,
M. Frazier, H. Shields, M. Yakuba, and S. B. King) “Hemoglobin Denitrosylation.” Annual
Meeting of the Biophysical Society,
Presentation: (with X. L. Xu, R. P. Patel, and M. T. Gladwin) “Simulation of the Diffusion and Reaction
of Nitric Oxide Produced within Erythrocytes.”
Annual Meeting of the Biophysical Society,
Presentation: (with K. Huang, X.
L. Xu, H. Shields, A. Jeffers, M. Cho,
J. M. Huang, B. King, M. Gladwin, and R. Patel)
“Nitrite and Deoxygenated Hemoglobin: A Source of Nitric Oxide.” Annual Meeting of the Biophysical Society,
Presentation: (with K. J. Chen, R.
R. Hantgan, and S. K. Ballas) “The Aggregation
and Polymerization of Hemoglobin in High Phosphate Buffer System.” Annual Meeting of the Biophysical Society,
Invited talk: “Biophysical
Studies of Nitrite in Blood.” First International meeting
of the Nitrite Tie Club,
Presentation: (with M. T. Gladwin,
K. Cosby, K. S. Partovi, R. P. Patel, J. H. Crawford,
A. N. Schechter, and R. O. Cannon) “Novel Function of Human Hemoglobin as
a Nitrite Reductase Regulates Nitric Oxide Homeostasis
and Hypoxic Vasodilation.” ASH Meeting,
Presentation: (with J. H. Crawford,
M. T. Gladwin, and R. P. Patel) “Metabolism of Nitrite to a Vasodilator
by Deoxyhemoglobin.”
Free Radical Biology and Medicine Meeting,
Presentation: (with X. Xu, M. Cho, N. Spencer, N. Patel,
Z. Huang, H. Shields, S. King, M. Gladwin, and N. Hogg) “Nitric Oxide Does Not Transfer Between Heme and B-93 Thiol of Human Hemoglobin
During Cycles of Oxygenation and Deoxygenation.” Free Radical Biology
Meeting,
Presentation: (with M. Yakubu, and S. B. King) “Approaches to the Identification of Hydroxylamine
and Other Nitric Oxide Species from the Metabolism of Hydroxyurea.” Free Radical Biology
Meeting,
Salsbury, Freddie R.
Presentation: (with J. Hill) “Developments in
Local and Nonlocal Functionals
in Magnetic Field Density Functional Theory.”
American Physical Society Spring Meeting,
Presentation: (with W. G. Han, L. Noodleman, and C. L. Brooks) “A Theoretical Study of a Blue Fluorescent Antibody.” American Physical Society Spring Meeting, March 2004.
Presentation: (with M. S. Lee) “Constant-pH Molecular dynamics: Principles and Applications.” American Physical Society Spring Meeting, March 2004.
Williams, Richard T.
Presentation: (with John
Wilkinson and K. B. Ucer) “Picosecond Excitonic Luminescence in ZnO and
Other Wide-gap Semiconductors.”
International Conference on Luminescent Detectors and Transformers of
Radiation,
Presentation: (with John
Wilkinson and K. B. Ucer) “The Oscillator Strength of Extended Exciton States and Possibility for very Fast Scintillators.”
International Conference on Inorganic Scintillators
and their Applications,
III. Editorships,
Offices, and Consultancies
Carroll, David L.
Nanotube based Devices, Volume 722 from the
MRS Symposium Proceedings Series, Ed. P. Bernier, D.L. Carroll, G.-T. Kim, S. Roth, MRS press (2003)
Review board for the Science Foundation of Ireland
Review panel for the National Science Foundation: Career awards panel
National Nanoscience infrastructure panel
Reviewer for:
Science
JVST
Synth. Met.
Nanotechnology
Nanoletters
Journal of Chemical Physics
Chem. Phys. Lett.
Physical Review
Fetrow, Jacquelyn S.
Editorial Board Service for Journal: Proteins: Structure Function and Genetics.
Board of Directors, Quantum Bio,
Kim-Shapiro, Daniel B.
Journals reviewed for: Biophysical Journal, Journal of Biological Chemistry, Blood, Journal of Pediatric Hematology/Oncology, Circulation Research, Medical Science Monitor, Inorganic Chemistry, British Journal of Haematology, FEBS Letters, and Journal of Physical Chemistry. Note: Not listed as editorial board member on any of these. In some cases, listed as “official” reviewer. In other cases just does reviews.